Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

[detail level 123]

▼NJson
CAllOfRequirement	Requires that all of a list of Requirements hold
CAnyOfRequirement	Requires that at least one of a list of Requirements hold
CArrayRequirement	Array of Requirements
CBooleanRequirement	Requires json value to be of type Bool
CDependencyRequirement	Requires dependencies to be met
CEnumRequirement	Requires entry to be member of an enum
CIntegerRequirement	Requirements on Integer values
CNotRequirement	Requires a given Requirement to fail
CNullRequirement	Requires value to be of type Null
CNumberRequirement	Requirements on a numeric value
CObjectRequirement	Requirements on an object
COneOfRequirement	Requires exactly one of a list of Requirements to hold
CRequirement	Requirements on input files
CRequirementLoader	Helper class to load Requirement
CStringRequirement	Requirements on strings
▼NSSAGES
CAlphaRMSDCV	Collective variable to measure alpha helix secondary structure
CAngleCV	Collective variable to calculate angle
CANNCV	ANN (artifical neural network) collective variables
CAntiBetaRMSDCV	Collective variable to measure antiparallel beta secondary structure
CBoxVolumeCV	Collective variable on the volume of a box
CCollectiveVariable	Abstract class for a collective variable
CCVManager	Collective variable manager
CGyrationTensorCV	Collective variable on components of the gyration tensor
CMockCV	Mock collective variable for testing purposes
CPairwiseCV	Generalized collective variable based on pairwise properties of atoms
CParallelBetaRMSDCV	Collective variable to measure parallel beta sheet secondary structure
CParticleCoordinateCV	Collective variable on a particle coordinate
CParticlePositionCV	Collective variable on an particle position
CParticleSeparationCV	Collective variable on the distance between two particles' centers of mass
CRMSDCV	Collective variable to calculate root mean square displacement
CRouseModeCV	Collective variable is a Rouse mode for a polymer chain comprised of N particle groups
CTorsionalCV	Collective variable on the torsion angles
CBuildException	Exception to be thrown when building the Driver fails
CEventListener	Base abstract class for listening in to events fired by "Hook"
▼CGrid	Basic Grid
CGridIterator	Custom Iterator
CGridBase	Base class for Grids
CHook	Base class for hooks into the simultion engines
CJSONLoader	Class for loading JSON content from files
CJSONLoaderPlugin	Abstract class for JSON loader plugins
CIncludePlugin	Class for JSON loader include plugin
CLogger	Base class for logging SSAGES data
CABF	Adaptive Biasing Force Algorithm
CANN	Artificial Neural Network Method
CBFS	Basis Function Sampling Algorithm
CCFF	Combined Force Frequency (CFF) Algorithm
CDirectForwardFlux	ForwardFlux sampling method
CElasticBand	Multi-walker Elastic Band
CFiniteTempString	Finite Temperature Spring Method
▼CForwardFlux	ForwardFlux sampling method
CFFSConfigID	Nested class to store different FFS Config IDs
CHill	Multidimensional hill
CMeta	"Vanilla" multi-dimensional Metadynamics
CMethod	Interface for Method implementations
CStringMethod	String base class for FTS, Swarm, and elastic band
CSwarm	Swarm of Trajectories String Method
CUmbrella	Umbrella sampling method
CResourceHandler	Class that handles SSAGES resources for a simulation
CSnapshot	Class containing a snapshot of the current simulation in time
CBasisLUT	Look-up table for basis functions
CMap	Map for histogram and coefficients
CBasisFunction	Abstract class for all BasisFunction inheritance
CChebyshev	Defines the class of Chebyshev polynomials
CLegendre	Defines the class of Legendre polynomials
CFourier	Defines the class of Fourier polynomials
CBasisEvaluator	Calculates the inner product of all the basis functions and the histogram
CPairwiseKernel	Pairwise kernel base class
CGaussianPK	Gaussian Function
CRationalSwitchPK	Rational Switching Function
CReadBackbone	Utility class to read protein backbone atoms from a reference file
CReadFile	Utility class to read file