SSAGES  0.9.3
Software Suite for Advanced General Ensemble Simulations
SSAGES::AlphaRMSDCV Member List

This is the complete list of members for SSAGES::AlphaRMSDCV, including all inherited members.

AlphaRMSDCV(std::vector< int > resids, std::string refpdb, double unitconv)SSAGES::AlphaRMSDCVinline
atomids_SSAGES::AlphaRMSDCVprivate
bounds_SSAGES::CollectiveVariableprotected
boxgrad_SSAGES::CollectiveVariableprotected
Build(const Json::Value &json, const std::string &path)SSAGES::AlphaRMSDCVinlinestatic
BuildCV(const Json::Value &json, const std::string &path)SSAGES::CollectiveVariablestatic
CollectiveVariable()SSAGES::CollectiveVariableinline
Evaluate(const Snapshot &snapshot) overrideSSAGES::AlphaRMSDCVinline
SSAGES::CollectiveVariable::Evaluate(const class Snapshot &)=0SSAGES::CollectiveVariablepure virtual
GetBoundaries()SSAGES::CollectiveVariableinline
GetBoxGradient() constSSAGES::CollectiveVariableinline
GetDifference(double location) constSSAGES::CollectiveVariableinlinevirtual
GetGradient() constSSAGES::CollectiveVariableinline
GetMinimumImage(double) constSSAGES::CollectiveVariableinlinevirtual
GetPeriodicValue(double location) constSSAGES::CollectiveVariableinlinevirtual
GetValue() constSSAGES::CollectiveVariableinline
grad_SSAGES::CollectiveVariableprotected
ids_only_SSAGES::AlphaRMSDCVprivate
Initialize(const Snapshot &snapshot) overrideSSAGES::AlphaRMSDCVinline
SSAGES::CollectiveVariable::Initialize(const class Snapshot &)SSAGES::CollectiveVariableinlinevirtual
refdists_SSAGES::AlphaRMSDCVprivate
refpdb_SSAGES::AlphaRMSDCVprivate
resids_SSAGES::AlphaRMSDCVprivate
unitconv_SSAGES::AlphaRMSDCVprivate
val_SSAGES::CollectiveVariableprotected
~CollectiveVariable()SSAGES::CollectiveVariableinlinevirtual
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